Reset Citrix Receiver Settings
If your Citrix connection, applications, or duplicate icons are appearing in your Windows Start Menu, you should reset your Citrix Receiver in the following manner.
1. Right click on the Citrix Receiver icon in Windows system tray
2. Select Advanced Preferences

3. Choose Reset Receiver

4. Select Yes, reset receiver

Now, you will see your Windows Desktop flash with icons – and you should see your applications connect again.
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Comments
"C:\Program Files (x86)\Citrix\ICA Client\SelfServicePlugin\CleanUp.exe /silent -cleanUser"
Still get prompted everytime
"C:\Program Files (x86)\Citrix\ICA Client\SelfServicePlugin\CleanUp.exe /silent -cleanUser"
Can you do this from the command line without being prompted